Table 3.

Summary of SNPs and genes identified through whole genome association study using 10K chip

No.GeneSNPLocuslinkCytobandDescription
1ABCA4rs546550241p22.1-p21ATP-binding cassette, subfamily A member 4
2ACYP2rs2010461982p16.2Muscle-type acylphosphatase 2
3AKAP2rs723706112179q31-q33A-kinase anchor protein 2 isoform 2
4ALS2CR12rs14061211305402q33.2ALS2CR12 gene product
5C13orf18rs14081958018313q14.11Chromosome 13 open reading frame 18
6DNAH8rs205018017696p21.31-p21.1Dynein, axonemal, heavy polypeptide 8
7EFA6Rrs1565138233628p23.3ADP-ribosylation factor guanine nucleotide factor 6
8EPHB1rs1515366, rs151536720473q21-q23Ephrin receptor EphB1 precursor
9FLJ31810rs1021447, rs13434561580389p21.1
10FLJ34278rs131660728347012q13.12
11FLJ34922rs9382989160717q21.1
12GALNT13rs7070771148052q24.1UDP-N-acetyl-α-d-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
13GASC1rs1340513230819p24Gene amplified in squamous cell carcinoma 1
14GPR158rs14140455751210p12.31G protein–coupled receptor 158
15GRIN3Ars9421421164439q31.1Glutamate receptor, ionotropic, N-methyl-d-aspartate 3A
16KIAA0802rs21432672325518p11.22
17KIAA1632rs10759065772418q21.1
18LOC374416rs536215
19LOC374699rs727187
20LOC376905rs1824305, rs1824306
21LOC377255rs38055
22MYH3rs876660
rs876658462117p13.1Myosin, heavy polypeptide 3, skeletal muscle, embryonic
23PACSIN1rs3845765, rs3800472299936p21.3Protein kinase C and casein kinase substrate in neurons 1
24PGRP-Lrs95911711477019q13.2Peptidoglycan recognition protein L precursor
25PIK3C3rs52911528918q12.3Phosphoinositide-3-kinase, class 3
26PKP4rs210821785022q23-q31Plakophilin 4
27PLCB1rs2143267, rs28897862323620p12Phosphoinositide-specific phospholipase Cβ1 isoform b
28RAMPrs201402951514RA-regulated nuclear matrix-associated protein
29SGCDrs25684664445q33-q34δ-Sarcoglycan isoform 2
30SLC9A9rs9560622851953q23Solute carrier family 9
31SYNE1rs725467233456q25Nesprin 1 isoform α
32UBE2E2rs77848073253p24.2Ubiquitin-conjugating enzyme E2E 2
33XDHrs20684774982p23-p22Xanthine dehydrogenase