Table 1.

Affymetrix IDFold up-regulationGene name
(A) Selection of genes up-regulated in CD133+ CSC lines
Growth factors/intracellular signaling
    212448_at4.6Neural precursor cell expressed
    227449_at4.5EPH receptor A4
    226974_at4.4Neural precursor cell expressed
    204379_s_at4.0Fibroblast growth factor receptor 3
    227542_at2.0Suppressor of cytokine signaling 6
Neuronal proteins/neuronal progenitors
    206633_at20.4Cholinergic receptor
    204304_s_at19.0CD133/prominin 1
    216086_at6.0Synaptic vesicle glycoprotein 2C
DNA interacting proteins/transcription factors
    230785_at9.5Sal-like 3
    228347_at3.5Sine oculis homeobox homologue 1
    203604_at2.5Zinc finger protein 516
    203221_at2.3Transducin-like enhancer of split 1
    229123_at2.2Zinc finger protein 224
Migration and extracellular matrix–associated genes
    204724_s_at10.9Collagen, type IX, α 3
    203413_at10.3NEL-like 2
(B) Selection of genes up-regulated in CD133 CSC lines
Immune system
    212998_x_at44.9MHC, class II, HLA-DQ β1
    213831_at36.1MHC, class II, HLA-DQ α1
    215193_x_at21.2MHC, class II, HLA-DR β1
    208306_x_at16.9MHC, class II, HLA-DR α
    211991_s_at12.3MHC, class II, HLA-DP α1
    1567628_at9.6CD74 antigen
    217478_s_at8.1MHC, class II, HLA-DM α
    203932_at4.9MHC, class II, DM β
Growth factors/receptors/intracellular signaling
    203987_at26.6Frizzled homologue 6
    205290_s_at5.6Bone morphogenetic protein 2
    208712_at5.3Cyclin D1
    38037_at3.3Heparin-binding EGF-like growth factor
    210095_s_at2.8Insulin-like growth factor binding protein 3
    202794_at2.7Inositol polyphosphate-1-phosphatase
    217717_s_at2.4Tyrosine 3-monooxygenase activation protein
    201537_s_at2.3Dual-specificity phosphatase 3
    211665_s_at2.0Son of sevenless homologue 2
    209311_at2.0BCL2-like 2
    219483_s_at2.0Porcupine homologue
Neuronal proteins/neuronal progenitors
    202391_at61.3Brain-abundant, membrane-attached signal protein 1
    210770_s_at3.9Voltage-dependent calcium channel (P/Q type, α 1A subunit)
DNA interacting proteins/transcription factors
    227705_at3.8Transcription elongation factor A (SII)-like 7
    223603_at3.7Zinc finger protein 179
    225941_at3.4Eukaryotic translation initiation factor 4E member 3
    229412_at3.4Taube nuss homologue
    213189_at2.7MYC induced nuclear antigen
    229986_at2.3Kruppel-like zinc finger factor X17
    59999_at2.3Hypoxia-inducible factor 1, α subunit inhibitor
    206472_s_at2.2Transducin-like enhancer of split 3/Esp1 homologue
    1555420_a_at2.1Kruppel-like factor 7
Migration and extracellular matrix–associated genes
    203167_at3.1Tissue inhibitor of metalloproteinase metallopeptidase inhibitor 2
    229689_s_at2.3Discs, large homologue 5