Table 1.

Summary of the data resources of the current TANRIC release

Data sourceCancer type#Normal samples#Tumor samplesSequencing strategyRead length#Expressed lncRNAsa
TCGABladder urothelial carcinoma (BLCA)19252Paired-end481,958
TCGABrain lower grade glioma (LGG)0486Paired-end482,301
TCGABreast invasive carcinoma (BRCA)105837Paired-end501,960
TCGACervical squamous cell carcinoma and endocervical adenocarcinoma (CESC)3196Paired-end481,846
TCGAColon adenocarcinoma (COAD)0157Single-end76714
TCGASkin cutaneous melanoma (SKCM)0226Paired-end481,755
TCGAGlioblastoma multiforme (GBM)0154Paired-end762,369
TCGAHead and neck squamous cell carcinoma (HNSC)42426Paired-end481,357
TCGAKidney chromophobe (KICH)2566Paired-end481,971
TCGAKidney renal clear cell carcinoma (KIRC)67448Paired-end502,111
TCGAKidney renal papillary cell carcinoma (KIRP)30198Paired-end482,118
TCGALiver hepatocellular carcinoma (LIHC)50200Paired-end481,446
TCGALung adenocarcinoma (LUAD)58488Paired-end482,031
TCGALung squamous cell carcinoma (LUSC)17220Paired-end501,883
TCGAOvarian serous cystadenocarcinoma (OV)0412Paired-end751,866
TCGAProstate adenocarcinoma (PRAD)52374Paired-end482,010
TCGARectal adenocarcinoma (READ)071Single-end76716
TCGAStomach adenocarcinoma (STAD)33285Paired-end751,328
TCGAThyroid carcinoma (THCA)59497Paired-end481,900
TCGAUterine corpus endometrioid carcinoma (UCEC)4316Single-end76855
CCLETumor cell lines0739Paired-end1012,137
IndependentChinese_GBM0274Paired-end1012,419
IndependentJapanese_KIRC097Paired-end1002,308
IndependentKorean_LUAD7783Paired-end1012,569
  • aExpressed lncRNAs defined as those with an average RPKM ≥ 0.3 across all samples in each cancer type.